That's odd, I'm not seeing that. That obviously shouldn't happen. :-)
I read quite a few pages of this thread and the thread for the Quick Settings Control Panel by kevdliu that's in this ROM, and when I check the toggles I want and then hit Apply, it restarts SystemUI as it should just fine. If I swipe down I see my photo and the toggles, but within 5 - 10 seconds those go away totally, no picture, no toggles. I can re-apply my settings and they may/may not appear, question is, am I not doing something that I should be to have these appear when I swipe down the status bar? If that's the case, please let me know. Thank you!
Try clearing data in systemui and qscp?